You can adjust calories with larger or smaller fruit and vegetable portions. (For instance a small apple might be 75 calories, a larger one 100. Either is fine as long as it is a single apple.) Eat enough veggies to make up the difference after your fruit and protein. You don't have to stick to portion sizes with your veggies. I use my kitchen scale to figure out ounces for everything, then plug it into a calculator spreadsheet that does the math for me.
Why not enjoy both your fruits? You aren't going to lose any faster if you cut one out.
I think one of the bonuses of following the protocol is that it teaches you how much pleasure there can be from eating simple, fresh foods. And fruit is one of the joys of that. If leaving out the melba is for gluten issues, I've found that you can use a gluten-free cracker with a similar macros as the melba and it works fine with the protocol. In Pounds & Inches, it does mention than a small amount of starch is needed.
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